# Bioquik Documentation

Welcome to **Bioquik**, a high-performance toolkit for counting DNA sequence motifs across large FASTA datasets.

Bioquik is designed for **batch analysis**. It processes directories of FASTA files in parallel and writes results to disk as CSV, JSON, and optional plots.

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## Installation

```shell
pip install bioquik
```

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## Quickstart

See the Quickstart guide for command-line and Python examples.

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## Contents

```{toctree}
:maxdepth: 2
:caption: Tutorials

quickstart
validation
reports
```

```{toctree}
:maxdepth: 2
:caption: Architecture

architecture
```

```{toctree}
:maxdepth: 2
:caption: API Reference

api/modules
```