bioquik

• bioquik package
  • Submodules
  • bioquik.cli module
    • count()
  • bioquik.fasta_worker module
    • process_fasta_file()
  • bioquik.fmindex module
    • FMIndex
      • FMIndex.C
      • FMIndex.alphabet
      • FMIndex.bwt
      • FMIndex.count()
      • FMIndex.locate()
      • FMIndex.sa_sample_rate
      • FMIndex.sa_samples
      • FMIndex.seq
      • FMIndex.seq_b
      • FMIndex.wt
  • bioquik.motifs module
    • build_pattern_to_motifs()
    • generate_motifs()
  • bioquik.plotter module
    • plot_distribution()
    • plot_heatmap()
  • bioquik.processor module
    • run_count()
  • bioquik.reports module
    • combine_csv()
    • write_summary()
  • bioquik.validate module
    • validate_dir()
    • validate_patterns()
  • bioquik.wavelettree module
    • WaveletTree
      • WaveletTree.alphabet
      • WaveletTree.bitvec
      • WaveletTree.left
      • WaveletTree.length
      • WaveletTree.prefix_ranks
      • WaveletTree.rank()
      • WaveletTree.right
      • WaveletTree.sample_rate
  • Module contents
    • FMIndex
      • FMIndex.C
      • FMIndex.alphabet
      • FMIndex.bwt
      • FMIndex.count()
      • FMIndex.locate()
      • FMIndex.sa_sample_rate
      • FMIndex.sa_samples
      • FMIndex.seq
      • FMIndex.seq_b
      • FMIndex.wt
    • WaveletTree
      • WaveletTree.alphabet
      • WaveletTree.bitvec
      • WaveletTree.left
      • WaveletTree.length
      • WaveletTree.prefix_ranks
      • WaveletTree.rank()
      • WaveletTree.right
      • WaveletTree.sample_rate
    • build_pattern_to_motifs()
    • generate_motifs()
    • process_fasta_file()